X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=readblast.h;h=ef5ff9afa182f5fb7f7226c506481a0252964962;hb=6c2b1e530a5c0bb87040e58a3e410097acdfcc3d;hp=fd32380c20c1a7145a8c65d07700b54d2d5bc63b;hpb=aa9238c0a9e6e7aa0ed8b8b606b08ad4fd7dcfe3;p=mothur.git

diff --git a/readblast.h b/readblast.h
index fd32380..ef5ff9a 100644
--- a/readblast.h
+++ b/readblast.h
@@ -10,7 +10,7 @@
  */
 
 #include "mothur.h"
-#include "sparsematrix.hpp"
+#include "sparsedistancematrix.h"
 #include "nameassignment.hpp"
 
 /****************************************************************************************/
@@ -26,7 +26,7 @@ public:
 	~ReadBlast() {}
 	
 	int read(NameAssignment*);
-	SparseMatrix* getDistMatrix()		{	return matrix;		}
+	SparseDistanceMatrix* getDistMatrix()		{	return matrix;		}
 	vector<seqDist> getOverlapMatrix()	{	return overlap;		}
 	string getOverlapFile()				{	return overlapFile;	}
 	string getDistFile()				{	return distFile;	}
@@ -38,7 +38,7 @@ private:
 	bool minWanted;  //if true choose min bsr, if false choose max bsr
 	bool hclusterWanted;
 	
-	SparseMatrix* matrix;
+	SparseDistanceMatrix* matrix;
 	vector<seqDist> overlap;
 	MothurOut* m;