X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=readblast.h;h=ef5ff9afa182f5fb7f7226c506481a0252964962;hb=5a4ac4f954c4b4445bcee272f1f8220ddcc9c1e4;hp=fd32380c20c1a7145a8c65d07700b54d2d5bc63b;hpb=0caf3fbabaa3ece404f8ce77f4c883dc5b1bf1dc;p=mothur.git diff --git a/readblast.h b/readblast.h index fd32380..ef5ff9a 100644 --- a/readblast.h +++ b/readblast.h @@ -10,7 +10,7 @@ */ #include "mothur.h" -#include "sparsematrix.hpp" +#include "sparsedistancematrix.h" #include "nameassignment.hpp" /****************************************************************************************/ @@ -26,7 +26,7 @@ public: ~ReadBlast() {} int read(NameAssignment*); - SparseMatrix* getDistMatrix() { return matrix; } + SparseDistanceMatrix* getDistMatrix() { return matrix; } vector getOverlapMatrix() { return overlap; } string getOverlapFile() { return overlapFile; } string getDistFile() { return distFile; } @@ -38,7 +38,7 @@ private: bool minWanted; //if true choose min bsr, if false choose max bsr bool hclusterWanted; - SparseMatrix* matrix; + SparseDistanceMatrix* matrix; vector overlap; MothurOut* m;