X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=readblast.h;h=97ce6c74cbf768aeec8d2f879fb7c8ad887a1042;hb=70491a12902e89b85cfa6b44a7b7fbe066ee2ac1;hp=fd32380c20c1a7145a8c65d07700b54d2d5bc63b;hpb=0caf3fbabaa3ece404f8ce77f4c883dc5b1bf1dc;p=mothur.git

diff --git a/readblast.h b/readblast.h
index fd32380..97ce6c7 100644
--- a/readblast.h
+++ b/readblast.h
@@ -10,7 +10,7 @@
  */
 
 #include "mothur.h"
-#include "sparsematrix.hpp"
+#include "sparsedistancematrix.h"
 #include "nameassignment.hpp"
 
 /****************************************************************************************/
@@ -26,10 +26,10 @@ public:
 	~ReadBlast() {}
 	
 	int read(NameAssignment*);
-	SparseMatrix* getDistMatrix()		{	return matrix;		}
-	vector<seqDist> getOverlapMatrix()	{	return overlap;		}
-	string getOverlapFile()				{	return overlapFile;	}
-	string getDistFile()				{	return distFile;	}
+	SparseDistanceMatrix* getDistMatrix()		{	return matrix;		}
+	vector<seqDist> getOverlapMatrix()          {	return overlap;		}
+	string getOverlapFile()                     {	return overlapFile;	}
+	string getDistFile()                        {	return distFile;	}
 	
 private:
 	string blastfile, overlapFile, distFile;
@@ -38,7 +38,7 @@ private:
 	bool minWanted;  //if true choose min bsr, if false choose max bsr
 	bool hclusterWanted;
 	
-	SparseMatrix* matrix;
+	SparseDistanceMatrix* matrix;
 	vector<seqDist> overlap;
 	MothurOut* m;