X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=rarefactsharedcommand.h;h=ee16221903ce2ee738cd7b941ca90c5b57e05c04;hb=cdf9083dc32543cc640e72e9ca3aee0323cbad45;hp=da26d174ca3c3cc9da41027f5252aa8f58288f20;hpb=74844a60d80c6dd06e3fb02ee9b928424f9019b0;p=mothur.git

diff --git a/rarefactsharedcommand.h b/rarefactsharedcommand.h
index da26d17..ee16221 100644
--- a/rarefactsharedcommand.h
+++ b/rarefactsharedcommand.h
@@ -22,7 +22,12 @@ class RareFactSharedCommand : public Command {
 	
 public:
 	RareFactSharedCommand(string);
+	RareFactSharedCommand();
 	~RareFactSharedCommand();
+	vector<string> getRequiredParameters();
+	vector<string> getValidParameters();
+	vector<string> getRequiredFiles();
+	map<string, vector<string> > getOutputFiles() { return outputTypes; }
 	int execute();	
 	void help();
 	
@@ -34,13 +39,15 @@ private:
 	ValidCalculators* validCalculator;
 	Rarefact* rCurve;
 	vector<Display*> rDisplays;
-	int freq, nIters;
+	int nIters;
 	string format;
-
+	float freq;
+	
 	bool abort, allLines, jumble;
 	set<string> labels; //holds labels to be used
 	string label, calc, groups, outputDir;
 	vector<string>  Estimators, Groups, outputNames;
+	map<string, vector<string> > outputTypes;
 
 
 };