X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=rarefactsharedcommand.h;h=af73e132001d1e80bf239362b5541cd08c99d85e;hb=006601d68abe8d0061f77e8d28323b160750e343;hp=a5b45468d7059ad2c9e8877376c0154102d05316;hpb=49d2b7459c5027557564b21e9487dadafbbbdc96;p=mothur.git

diff --git a/rarefactsharedcommand.h b/rarefactsharedcommand.h
index a5b4546..af73e13 100644
--- a/rarefactsharedcommand.h
+++ b/rarefactsharedcommand.h
@@ -37,18 +37,19 @@ public:
 private:
 	
 	vector<SharedRAbundVector*> lookup;
-	int nIters;
+	int nIters, subsampleSize, iters;
 	string format;
 	float freq;
 	
      map<int, string> file2Group; //index in outputNames[i] -> group
-	bool abort, allLines, jumble, groupMode;
+	bool abort, allLines, jumble, groupMode, subsample;
 	set<string> labels; //holds labels to be used
 	string label, calc, groups, outputDir, sharedfile, designfile;
 	vector<string>  Estimators, Groups, outputNames, Sets;
     
     int process(GroupMap&, string);
     vector<string> createGroupFile(vector<string>&);
+    int subsampleLookup(vector<SharedRAbundVector*>&, string);
 
 };