X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=rarefactsharedcommand.cpp;h=5e36299505246ecbdbae8c64822a59e916f54dcc;hb=8c548985e92f5be0bde10eddea89a6ae888b73da;hp=189be88de11e4160b4e185727e324a581063727f;hpb=e765c82f82cf749825b4e577636553afb66d0dc8;p=mothur.git

diff --git a/rarefactsharedcommand.cpp b/rarefactsharedcommand.cpp
index 189be88..5e36299 100644
--- a/rarefactsharedcommand.cpp
+++ b/rarefactsharedcommand.cpp
@@ -15,20 +15,13 @@
 RareFactSharedCommand::RareFactSharedCommand(){
 	try {
 		globaldata = GlobalData::getInstance();
-		string fileNameRoot, groups;
+		string fileNameRoot;
 		fileNameRoot = getRootName(globaldata->inputFileName);
-		groupmap = globaldata->gGroupmap;
-		
-		//initialize groups for label
-		groups = "";
-		for (int i = 0; i < groupmap->namesOfGroups.size(); i++) {
-			groups = groups + groupmap->namesOfGroups[i];
-		}
-		
+				
 		int i;
 		for (i=0; i<globaldata->sharedRareEstimators.size(); i++) {
 			if (globaldata->sharedRareEstimators[i] == "sharedobserved") { 
-				rDisplays.push_back(new RareDisplay(new SharedSobs(), new SharedThreeColumnFile(fileNameRoot+"r_shared.observed", groups)));
+				rDisplays.push_back(new RareDisplay(new SharedSobs(), new SharedThreeColumnFile(fileNameRoot+"shared.rarefaction", "")));
 			}
 		}
 	}