X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=rarefactsharedcommand.cpp;h=58f73f34e45b61b30e5355ebd38cfa63f988448d;hb=39ef0543b73cb12dfc64529522b66ad3df7527d0;hp=9bd8805f4867a6e445b42324d8b13d406471eace;hpb=7e0cf6431e287072c40b2c10c9e08199fce29ef4;p=mothur.git

diff --git a/rarefactsharedcommand.cpp b/rarefactsharedcommand.cpp
index 9bd8805..58f73f3 100644
--- a/rarefactsharedcommand.cpp
+++ b/rarefactsharedcommand.cpp
@@ -19,8 +19,6 @@ RareFactSharedCommand::RareFactSharedCommand(){
 		fileNameRoot = getRootName(globaldata->inputFileName);
 		format = globaldata->getFormat();
 		validCalculator = new ValidCalculators();
-		
-		setGroups();
 				
 		int i;
 		for (i=0; i<globaldata->Estimators.size(); i++) {
@@ -80,6 +78,9 @@ int RareFactSharedCommand::execute(){
 			order = SharedList->getSharedOrderVector();
 		}
 		
+		//set users groups
+		setGroups();
+		
 		while(order != NULL){
 		
 			if(globaldata->allLines == 1 || globaldata->lines.count(count) == 1 || globaldata->labels.count(order->getLabel()) == 1){