X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=rarefactsharedcommand.cpp;fp=rarefactsharedcommand.cpp;h=8cf1f2fd6606f97bed2e10d0301994d769a8aa94;hb=191ae1be0679d5cf4eda950b3b1bf26fb7dd503d;hp=0be8141636a1fffaacce16f2592e6bf8738ad400;hpb=fc9bc621a09de13eb76ca4f5cee930b03de43dcd;p=mothur.git

diff --git a/rarefactsharedcommand.cpp b/rarefactsharedcommand.cpp
index 0be8141..8cf1f2f 100644
--- a/rarefactsharedcommand.cpp
+++ b/rarefactsharedcommand.cpp
@@ -26,6 +26,7 @@ vector<string> RareFactSharedCommand::getValidParameters(){
 //**********************************************************************************************************************
 RareFactSharedCommand::RareFactSharedCommand(){	
 	try {
+		abort = true;
 		//initialize outputTypes
 		vector<string> tempOutNames;
 		outputTypes["sharedrarefaction"] = tempOutNames;