X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=rarefactcommand.h;h=0e77a277e6ad7cda962a4c9476945f6b2aa6b557;hb=2c97dd48b8e27ee0a6a86c7a082f4c504c3357c6;hp=b4bce3e172d141ab5e1fdcea1c59bd35b25dadab;hpb=a44542a3c740cf957cff72ac71742f2fe48b0eaf;p=mothur.git

diff --git a/rarefactcommand.h b/rarefactcommand.h
index b4bce3e..0e77a27 100644
--- a/rarefactcommand.h
+++ b/rarefactcommand.h
@@ -42,7 +42,7 @@ private:
 	int nIters, abund, processors;
 	float freq;
 	
-	bool abort, allLines;
+	bool abort, allLines, groupMode;
 	set<string> labels; //holds labels to be used
 	string label, calc, sharedfile, listfile, rabundfile, sabundfile, format, inputfile;
 	vector<string>  Estimators;
@@ -50,7 +50,8 @@ private:
 	vector<string> groups;
 	string outputDir;
 	
-	vector<string> parseSharedFile(string);
+	vector<string> parseSharedFile(string, map<string, set<int> >&);
+	vector<string> createGroupFile(vector<string>&, map<int, string>);
 };
 
 #endif