X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=rarefactcommand.h;h=09de39fddfe89bc48fd9397a4e0fffc5e32d495a;hb=HEAD;hp=0e77a277e6ad7cda962a4c9476945f6b2aa6b557;hpb=2009a1a1f47e7467094d844e7c07ab8ddf7bb447;p=mothur.git

diff --git a/rarefactcommand.h b/rarefactcommand.h
index 0e77a27..09de39f 100644
--- a/rarefactcommand.h
+++ b/rarefactcommand.h
@@ -26,7 +26,9 @@ public:
 	vector<string> setParameters();
 	string getCommandName()			{ return "rarefaction.single";		}
 	string getCommandCategory()		{ return "OTU-Based Approaches";	}
+	
 	string getHelpString();	
+    string getOutputPattern(string);	
 	string getCitation() { return "Magurran AE (2004). Measuring biological diversity. Blackwell Pub.: Malden, Ma. \nhttp://www.mothur.org/wiki/Rarefaction.single"; }
 	string getDescription()		{ return "generate intra-sample rarefaction curves using a re-sampling without replacement approach"; }
 
@@ -39,7 +41,7 @@ private:
 	OrderVector* order;
 	InputData* input;
 	Rarefact* rCurve;
-	int nIters, abund, processors;
+	int nIters, abund, processors, alpha;
 	float freq;
 	
 	bool abort, allLines, groupMode;