X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=rarefactcommand.cpp;h=6e4197f7f8b4a9029709a9d4ab31f51c246d840b;hb=e4827e0945cbda536064e5a345996b2a7dfcbb81;hp=3c7975749e126645b91b7b0b53755e5f63e35789;hpb=d59f91eb1230d2c7867a92cb86138b7003100ab4;p=mothur.git

diff --git a/rarefactcommand.cpp b/rarefactcommand.cpp
index 3c79757..6e4197f 100644
--- a/rarefactcommand.cpp
+++ b/rarefactcommand.cpp
@@ -17,6 +17,7 @@
 #include "npshannon.h"
 #include "shannon.h"
 #include "jackknife.h"
+#include "coverage.h"
 
 //**********************************************************************************************************************
 
@@ -50,6 +51,8 @@ RareFactCommand::RareFactCommand(){
 					rDisplays.push_back(new RareDisplay(new Simpson(), new ThreeColumnFile(fileNameRoot+"r_simpson")));
 				}else if (globaldata->Estimators[i] == "bootstrap") { 
 					rDisplays.push_back(new RareDisplay(new Bootstrap(), new ThreeColumnFile(fileNameRoot+"r_bootstrap")));
+				}else if (globaldata->Estimators[i] == "coverage") { 
+					rDisplays.push_back(new RareDisplay(new Coverage(), new ThreeColumnFile(fileNameRoot+"r_coverage")));
 				}else if (globaldata->Estimators[i] == "nseqs") { 
 					rDisplays.push_back(new RareDisplay(new NSeqs(), new ThreeColumnFile(fileNameRoot+"r_nseqs")));
 				}