X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=rarefact.h;fp=rarefact.h;h=b4a4cfee88a1c9d4dfc1abe58eaa59594002d108;hb=20a2d0350a737a434c89f303662d64a8eeea7b05;hp=0000000000000000000000000000000000000000;hpb=bbb5879a7e566935c23d63d42bb945072424b939;p=mothur.git

diff --git a/rarefact.h b/rarefact.h
new file mode 100644
index 0000000..b4a4cfe
--- /dev/null
+++ b/rarefact.h
@@ -0,0 +1,38 @@
+#ifndef RAREFACT_H
+#define RAREFACT_H
+
+using namespace std;
+
+#include "rarefactioncurvedata.h"
+#include "raredisplay.h"
+#include "ordervector.hpp"
+
+
+
+class Rarefact {
+	
+public:
+	Rarefact(OrderVector* o, vector<Display*> disp) :
+			numSeqs(o->getNumSeqs()), order(o), displays(disp), label(o->getLabel())  {};
+	Rarefact(SharedOrderVector* sharedorder, vector<Display*> disp) :
+					numSeqs(sharedorder->getNumSeqs()), sharedorder(sharedorder), displays(disp), label(sharedorder->getLabel())  {};
+
+	~Rarefact(){};
+	void getCurve(int, int);
+	void getSharedCurve(int, int);
+	
+private:
+	SharedOrderVector* sharedorder;
+	GlobalData* globaldata;
+	OrderVector* order;
+	vector<Display*> displays;
+	int numSeqs, numGroupComb;
+	string label;
+	void mergeVectors(SharedRAbundVector*, SharedRAbundVector*);
+	vector<SharedRAbundVector*> lookup; 
+
+};
+
+
+#endif
+