X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=rarefact.h;fp=rarefact.h;h=5e42a787bb77f44a7bb989c738c45b8449ed6e29;hb=0caf3fbabaa3ece404f8ce77f4c883dc5b1bf1dc;hp=0000000000000000000000000000000000000000;hpb=1b73ff67c83892a025e597dabd9df6fe7b58206a;p=mothur.git

diff --git a/rarefact.h b/rarefact.h
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+++ b/rarefact.h
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+#ifndef RAREFACT_H
+#define RAREFACT_H
+
+#include "rarefactioncurvedata.h"
+#include "raredisplay.h"
+#include "ordervector.hpp"
+#include "mothur.h"
+
+
+class Rarefact {
+	
+public:
+	Rarefact(OrderVector* o, vector<Display*> disp, int p) :
+			numSeqs(o->getNumSeqs()), order(o), displays(disp), label(o->getLabel()), processors(p)  { m = MothurOut::getInstance(); }
+	Rarefact(vector<SharedRAbundVector*> shared, vector<Display*> disp) :
+					 lookup(shared), displays(disp) {  m = MothurOut::getInstance(); }
+
+	~Rarefact(){};
+	int getCurve(float, int);
+	int getSharedCurve(float, int);
+	
+private:
+	
+	OrderVector* order;
+	vector<Display*> displays;
+	int numSeqs, numGroupComb, processors;
+	string label;
+	void mergeVectors(SharedRAbundVector*, SharedRAbundVector*);
+	vector<SharedRAbundVector*> lookup; 
+	MothurOut* m;
+	
+	int createProcesses(vector<int>&, RarefactionCurveData*, int);
+	int driver(RarefactionCurveData*, int, int);
+
+};
+
+
+#endif
+