X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=rarefact.cpp;h=ca105b7f82fad6be8cc45e7b9e7953da3f4471e4;hb=8dd3c225255d7084e3aff8740aa4f1f1cabb367a;hp=032cd93752db10521d18495aa141888e37720963;hpb=5694c92fbf646fe01abc87bde2af59e14a9a56b6;p=mothur.git

diff --git a/rarefact.cpp b/rarefact.cpp
index 032cd93..ca105b7 100644
--- a/rarefact.cpp
+++ b/rarefact.cpp
@@ -157,7 +157,7 @@ int Rarefact::createProcesses(vector<int>& procIters, RarefactionCurveData* rcd,
 			for(int j=0;j<displays.size();j++){
 				string s = toString(processIDS[i]) + toString(j) + ".rarefact.temp";
 				displays[j]->inputTempFiles(s);
-				remove(s.c_str());
+				m->mothurRemove(s);
 			}
 		}
 		
@@ -183,7 +183,7 @@ try {
 		}
 		
 		//if jumble is false all iters will be the same
-		if (globaldata->jumble == false)  {  nIters = 1;  }
+		if (m->jumble == false)  {  nIters = 1;  }
 		
 		//convert freq percentage to number
 		int increment = 1;
@@ -196,7 +196,7 @@ try {
 				displays[i]->init(label);		  
 			}
 			
-			if (globaldata->jumble == true)  {
+			if (m->jumble == true)  {
 				//randomize the groups
 				random_shuffle(lookup.begin(), lookup.end());
 			}