X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=rarecalc.h;fp=rarecalc.h;h=8a0fb72b5ef946a14f343704f6e7c2b608305e3b;hb=0caf3fbabaa3ece404f8ce77f4c883dc5b1bf1dc;hp=0000000000000000000000000000000000000000;hpb=1b73ff67c83892a025e597dabd9df6fe7b58206a;p=mothur.git

diff --git a/rarecalc.h b/rarecalc.h
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+++ b/rarecalc.h
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+#ifndef RARECALC_H
+#define RARECALC_H
+/*
+ *  rarecalc.h
+ *  Dotur
+ *
+ *  Created by Sarah Westcott on 1/7/09.
+ *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
+ *
+ */
+
+/* This class is not currently used by Mothur */
+
+#include "calculator.h"
+
+/***********************************************************************/
+class RareCalc {
+
+public:
+	RareCalc(RAbundVector* b) : bins(b), numSeqs(b->getNumSeqs()), maxRank(b->getMaxRank()), numBins(b->getNumBins()) {	m = MothurOut::getInstance(); bMatrix = m->binomial(numSeqs+1); }
+	EstOutput getValues(int);
+	string getName()	{	return "rarecalc";	}
+private:
+	RAbundVector* bins;
+	vector<vector<double> > bMatrix;
+	int numSeqs, maxRank, numBins;
+	MothurOut* m;
+};
+
+/***********************************************************************/
+
+#endif