X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=rarecalc.h;fp=rarecalc.h;h=0000000000000000000000000000000000000000;hb=4a877efa127e56e81a21f53cfdbbfd3bfbe8c4ff;hp=8a0fb72b5ef946a14f343704f6e7c2b608305e3b;hpb=a6cf29fa4dac0909c7582cb1094151d34093ee76;p=mothur.git diff --git a/rarecalc.h b/rarecalc.h deleted file mode 100644 index 8a0fb72..0000000 --- a/rarecalc.h +++ /dev/null @@ -1,32 +0,0 @@ -#ifndef RARECALC_H -#define RARECALC_H -/* - * rarecalc.h - * Dotur - * - * Created by Sarah Westcott on 1/7/09. - * Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved. - * - */ - -/* This class is not currently used by Mothur */ - -#include "calculator.h" - -/***********************************************************************/ -class RareCalc { - -public: - RareCalc(RAbundVector* b) : bins(b), numSeqs(b->getNumSeqs()), maxRank(b->getMaxRank()), numBins(b->getNumBins()) { m = MothurOut::getInstance(); bMatrix = m->binomial(numSeqs+1); } - EstOutput getValues(int); - string getName() { return "rarecalc"; } -private: - RAbundVector* bins; - vector > bMatrix; - int numSeqs, maxRank, numBins; - MothurOut* m; -}; - -/***********************************************************************/ - -#endif