X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=qualityscores.h;h=8f2105a1d095bfe94502d28ae387b89e8da9ed7c;hb=bdb5d82e2a73829b4e1fa42656ad9bcb57e3e948;hp=dee5917208ed19992ffa9d2c7c6cb7ddaba6f85a;hpb=fe5bbb79f9434df947347881c47b430112f4253e;p=mothur.git

diff --git a/qualityscores.h b/qualityscores.h
index dee5917..8f2105a 100644
--- a/qualityscores.h
+++ b/qualityscores.h
@@ -30,6 +30,9 @@ public:
 	bool stripQualWindowAverage(Sequence&, int, int, double);
 	bool cullQualAverage(Sequence&, double);
 	void updateQScoreErrorMap(map<char, vector<int> >&, string, int, int, int);
+	void updateForwardMap(vector<vector<int> >&, int, int, int);
+	void updateReverseMap(vector<vector<int> >&, int, int, int);
+	
 private:
 	
 	double calculateAverage();