X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=qualityscores.h;h=8f2105a1d095bfe94502d28ae387b89e8da9ed7c;hb=bdb5d82e2a73829b4e1fa42656ad9bcb57e3e948;hp=5db43113f1b4aedea7761cd4ad7bcc3575542919;hpb=e0fbf58358a72f20352cf2a43922ab6b5bdf0cf8;p=mothur.git

diff --git a/qualityscores.h b/qualityscores.h
index 5db4311..8f2105a 100644
--- a/qualityscores.h
+++ b/qualityscores.h
@@ -29,6 +29,10 @@ public:
 	bool stripQualRollingAverage(Sequence&, double);
 	bool stripQualWindowAverage(Sequence&, int, int, double);
 	bool cullQualAverage(Sequence&, double);
+	void updateQScoreErrorMap(map<char, vector<int> >&, string, int, int, int);
+	void updateForwardMap(vector<vector<int> >&, int, int, int);
+	void updateReverseMap(vector<vector<int> >&, int, int, int);
+	
 private:
 	
 	double calculateAverage();