X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=qualityscores.h;h=500d3e98db79b934effee830b65f54afb0023af3;hb=a0f1fca79d2ddfa7ad36b4485039c68b5704fe8d;hp=49034b8ecb2a2b937901c9cfda132c00bcd5c4c4;hpb=731d19a6eaf81768ed35e4be25fbac5686a2a7a0;p=mothur.git

diff --git a/qualityscores.h b/qualityscores.h
index 49034b8..500d3e9 100644
--- a/qualityscores.h
+++ b/qualityscores.h
@@ -24,7 +24,7 @@ public:
 	QualityScores();
 	QualityScores(ifstream&);
 	string getName();
-	
+	int getLength(){    return (int)qScores.size();  }
 	vector<int> getQualityScores() { return qScores; }
 	void printQScores(ofstream&);
 	void trimQScores(int, int);
@@ -36,9 +36,9 @@ public:
 	void updateQScoreErrorMap(map<char, vector<int> >&, string, int, int, int);
 	void updateForwardMap(vector<vector<int> >&, int, int, int);
 	void updateReverseMap(vector<vector<int> >&, int, int, int);
-    void setName(string n) { seqName = n; }
+    void setName(string n); 
     void setScores(vector<int> qs) { qScores = qs; seqLength = qScores.size(); }
-    
+    vector<int> getScores() { return qScores; }
 	
 private:
 	
@@ -48,6 +48,8 @@ private:
 	
 	string seqName;
 	int seqLength;
+    
+    string getSequenceName(ifstream&);
 };
 	
 /**************************************************************************************************/