X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=qualityscores.h;fp=qualityscores.h;h=a802636fd364071ab15aa84c148ebb38fead14b4;hb=a2cde58c1e72199498a2142983ef040dce36da10;hp=500d3e98db79b934effee830b65f54afb0023af3;hpb=3e8b80da722e11c72bce957e2f42a6e884dd02b6;p=mothur.git

diff --git a/qualityscores.h b/qualityscores.h
index 500d3e9..a802636 100644
--- a/qualityscores.h
+++ b/qualityscores.h
@@ -30,9 +30,9 @@ public:
 	void trimQScores(int, int);
 	void flipQScores();
 	bool stripQualThreshold(Sequence&, double);
-	bool stripQualRollingAverage(Sequence&, double);
-	bool stripQualWindowAverage(Sequence&, int, int, double);
-	bool cullQualAverage(Sequence&, double);
+	bool stripQualRollingAverage(Sequence&, double, bool);
+	bool stripQualWindowAverage(Sequence&, int, int, double, bool);
+	bool cullQualAverage(Sequence&, double, bool);
 	void updateQScoreErrorMap(map<char, vector<int> >&, string, int, int, int);
 	void updateForwardMap(vector<vector<int> >&, int, int, int);
 	void updateReverseMap(vector<vector<int> >&, int, int, int);
@@ -42,7 +42,7 @@ public:
 	
 private:
 	
-	double calculateAverage();
+	double calculateAverage(bool);
 	MothurOut* m;
 	vector<int> qScores;