X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=qualityscores.cpp;h=1f86efc51304cc81fa2f359c8b2c996da52e8c30;hb=6b32d112bb60e9f7eb6d4407a4eed4c49b67bced;hp=0408b83ebaf0d79f31e5290278fa29e567c1cb87;hpb=2b5b02aad9df41a316d464ad335e9f6632e82175;p=mothur.git

diff --git a/qualityscores.cpp b/qualityscores.cpp
index 0408b83..1f86efc 100644
--- a/qualityscores.cpp
+++ b/qualityscores.cpp
@@ -44,7 +44,7 @@ QualityScores::QualityScores(ifstream& qFile){
             while(qFile.peek() != '>' && qFile.peek() != EOF){
                 if (m->control_pressed) { break; }
                 string temp = m->getline(qFile); m->gobble(qFile);
-                if (m->debug) { m->mothurOut("[DEBUG]: scores = '" + temp + "'\n.");  }
+                //if (m->debug) { m->mothurOut("[DEBUG]: scores = '" + temp + "'\n.");  }
                 qScoreString +=  ' ' + temp;
             }
             //cout << "done reading " << endl;
@@ -55,7 +55,7 @@ QualityScores::QualityScores(ifstream& qFile){
                 string temp;
                 qScoreStringStream >> temp;  m->gobble(qScoreStringStream);
                 
-                if (m->debug) { m->mothurOut("[DEBUG]: score " + toString(qScores.size()) + " = '" + temp + "'\n.");  }
+                //if (m->debug) { m->mothurOut("[DEBUG]: score " + toString(qScores.size()) + " = '" + temp + "'\n.");  }
                 
                 //check temp to make sure its a number
                 if (!m->isContainingOnlyDigits(temp)) { m->mothurOut("[ERROR]: In sequence " + seqName + "'s quality scores, expected a number and got " + temp + ", setting score to 0."); m->mothurOutEndLine(); temp = "0"; }