X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=qualityscores.cpp;h=1ef074df88919d9e15ac1655ea217c37b74949f4;hb=24083a26340293cb3a0e44bcf79edbc9b31f41db;hp=fca3d9f4c9cd17947116fbdb9a872bfce863fe47;hpb=662c0b60d65f79f672ab199300b7ee4975233465;p=mothur.git

diff --git a/qualityscores.cpp b/qualityscores.cpp
index fca3d9f..1ef074d 100644
--- a/qualityscores.cpp
+++ b/qualityscores.cpp
@@ -310,6 +310,7 @@ void QualityScores::updateQScoreErrorMap(map<char, vector<int> >& qualErrorMap,
 		int seqLength = errorSeq.size();
 		
 		int qIndex = start - 1;
+		cout << start << '\t' << stop << '\t' << seqLength << endl;
 		for(int i=0;i<seqLength;i++){
 			
 			if(errorSeq[i] == 'm')		{	qualErrorMap['m'][qScores[qIndex]] += weight;	}