X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=qstat.cpp;fp=qstat.cpp;h=0000000000000000000000000000000000000000;hb=4a877efa127e56e81a21f53cfdbbfd3bfbe8c4ff;hp=e07cdb3fb860b96a17ba2972474f0abb8bf05d7e;hpb=a6cf29fa4dac0909c7582cb1094151d34093ee76;p=mothur.git

diff --git a/qstat.cpp b/qstat.cpp
deleted file mode 100644
index e07cdb3..0000000
--- a/qstat.cpp
+++ /dev/null
@@ -1,68 +0,0 @@
-/*
- *  qstat.cpp
- *  Mothur
- *
- *  Created by Thomas Ryabin on 3/4/09.
- *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
- *
- */
-
-#include "qstat.h"
-
-
-/***********************************************************************/
-
-EstOutput QStat::getValues(SAbundVector* rank){
-	try {
-		
-		/*test data VVV
-		int dstring[] = {0,0,1,4,2,0,2,1,1,1,1,1,0,1,1,2,0,0,0,0,1,0,0,0,0,0,0,0,0,1,0,0,0,2,0,0,0,1,1,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1};
-		vector<int> dvec;
-		for(int i = 0; i < 171; i++)
-			dvec.push_back(dstring[i]);
-		int mr = 170;
-		int nb = 29;
-		int ns = 884;
-		SAbundVector rankw = SAbundVector(dvec, mr,nb,ns);
-		SAbundVector *rank = &rankw;*/
-		data.resize(1,0);
-		int numSpec = rank->getNumBins();
-		int r1 = -1;
-		int r3 = -1;
-		int r1Ind = 0;
-		int r3Ind = 0;
-		double sumSpec = 0;
-		double iqSum = 0;
-		for(int i = 1; i < rank->size(); i++) {
-			if(r1 != -1 && r3 != -1)
-				i = rank->size();
-				
-			sumSpec += rank->get(i);
-			
-			if(r1 == -1 && sumSpec >= numSpec*.25) {
-				r1 = rank->get(i);
-				r1Ind = i;
-			}
-			else if(r3 == -1 && sumSpec >= numSpec*.75) {
-				r3 = rank->get(i);
-				r3Ind = i;
-			}
-			else if(sumSpec >= numSpec*.25 && sumSpec < numSpec*.75)
-				iqSum += rank->get(i);
-		}
-		
-		double qstat = (.5*r1 + iqSum + .5*r3)/log((double)r3Ind/r1Ind);
-		
-		data[0] = qstat;
-		if (isnan(data[0]) || isinf(data[0])) { data[0] = 0; }
-		
-		return data;
-	}
-	catch(exception& e) {
-		m->errorOut(e, "QStat", "getValues");
-		exit(1);
-	}
-}
-
-/***********************************************************************/
-