X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=primerdesigncommand.cpp;h=960da85e8ce7ab4922f6afc38c728f2be5288ca2;hb=89cfcfcc9e648d2f956f2ff419e64ba7907106d2;hp=48bb00f5cc7b8f7bc9cacdce2bdb6e32aeec656b;hpb=14cddf859d97118481161bf3e85a647976020758;p=mothur.git

diff --git a/primerdesigncommand.cpp b/primerdesigncommand.cpp
index 48bb00f..960da85 100644
--- a/primerdesigncommand.cpp
+++ b/primerdesigncommand.cpp
@@ -39,7 +39,7 @@ vector<string> PrimerDesignCommand::setParameters(){
 string PrimerDesignCommand::getHelpString(){	
 	try {
 		string helpString = "";
-		helpString += "The primer.design allows you to design sequence fragments that are specific to particular OTUs.\n";
+		helpString += "The primer.design allows you to identify sequence fragments that are specific to particular OTUs.\n";
 		helpString += "The primer.design command parameters are: list, fasta, name, count, otunumber, cutoff, length, pdiffs, mintm, maxtm, processors and label.\n";
 		helpString += "The list parameter allows you to provide a list file and is required.\n";
         helpString += "The fasta parameter allows you to provide a fasta file and is required.\n";
@@ -1088,7 +1088,7 @@ map<string, int> PrimerDesignCommand::readCount(unsigned long int& numSeqs){
         map<string, int> nameMap;
         
         CountTable ct;
-        ct.readTable(countfile);
+        ct.readTable(countfile, false, false);
         vector<string> namesOfSeqs = ct.getNamesOfSeqs();
         numSeqs = ct.getNumUniqueSeqs();