X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=preclustercommand.h;h=0bd56c8662a5b8c622b57a4628f23cc829828f90;hb=4542a79d20176ff0ee830b0f9d4f4c92637439d9;hp=e63afa6c8af8ee442e267714fcfccd140d4f79dd;hpb=5c5c0428f6d548c28a8b903ac80efed4f92d59db;p=mothur.git diff --git a/preclustercommand.h b/preclustercommand.h index e63afa6..0bd56c8 100644 --- a/preclustercommand.h +++ b/preclustercommand.h @@ -48,8 +48,9 @@ public: vector setParameters(); string getCommandName() { return "pre.cluster"; } string getCommandCategory() { return "Sequence Processing"; } - string getOutputFileNameTag(string, string); + string getHelpString(); + string getOutputPattern(string); string getCitation() { return "Schloss PD, Gevers D, Westcott SL (2011). Reducing the effects of PCR amplification and sequencing artifacts on 16S rRNA-based studies. PLoS ONE. 6:e27310.\nhttp://www.mothur.org/wiki/Pre.cluster"; } string getDescription() { return "implements a pseudo-single linkage algorithm with the goal of removing sequences that are likely due to pyrosequencing errors"; }