X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=preclustercommand.h;h=0bd56c8662a5b8c622b57a4628f23cc829828f90;hb=3504e4e2feeb05aabb0c79aa42cb696522030924;hp=9844b8ffc1a951c47d606ec23e7caf45b4bf4ce1;hpb=96dbe925073caefaed6e6db85659c144a806aeb1;p=mothur.git

diff --git a/preclustercommand.h b/preclustercommand.h
index 9844b8f..0bd56c8 100644
--- a/preclustercommand.h
+++ b/preclustercommand.h
@@ -48,9 +48,10 @@ public:
 	vector<string> setParameters();
 	string getCommandName()			{ return "pre.cluster";				}
 	string getCommandCategory()		{ return "Sequence Processing";		}
-	string getOutputFileNameTag(string, string);
+	
 	string getHelpString();	
-	string getCitation() { return "http://www.mothur.org/wiki/Pre.cluster"; }
+    string getOutputPattern(string);	
+	string getCitation() { return "Schloss PD, Gevers D, Westcott SL (2011).  Reducing the effects of PCR amplification and sequencing artifacts on 16S rRNA-based studies.  PLoS ONE.  6:e27310.\nhttp://www.mothur.org/wiki/Pre.cluster"; }
 	string getDescription()		{ return "implements a pseudo-single linkage algorithm with the goal of removing sequences that are likely due to pyrosequencing errors"; }