X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=preclustercommand.cpp;h=bd3f172c2bcaa3e13ced0b5c57d92e39c9073969;hb=541bab1dac00688b4c3a8c4a95ab464412663c50;hp=24d22845c5a4fc33d109888e5f2007d25134672e;hpb=af0a94ea8f02421b2b73e77e68753a2b4c37768e;p=mothur.git

diff --git a/preclustercommand.cpp b/preclustercommand.cpp
index 24d2284..bd3f172 100644
--- a/preclustercommand.cpp
+++ b/preclustercommand.cpp
@@ -903,15 +903,9 @@ void PreClusterCommand::readNameFile(){
 		while (!in.eof()) {
 			in >> firstCol >> secondCol; m->gobble(in);
             
-            for (int i = 0; i < firstCol.length(); i++) {
-                if (firstCol[i] == ':') { firstCol[i] = '_'; m->changedSeqNames = true; }
-            }
-            
-            int size = 1;
-            for (int i = 0; i < secondCol.length(); i++) {
-                if (secondCol[i] == ':') { secondCol[i] = '_'; m->changedSeqNames = true; }
-                else if(secondCol[i] == ','){	size++;	}
-            }
+            m->checkName(firstCol);
+            m->checkName(secondCol);
+            int size = m->getNumNames(secondCol);
             
 			names[firstCol] = secondCol;
             sizes[firstCol] = size;