X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=pintail.h;h=c970fdd87371e66afef3a9e1a40b465857d07b4b;hb=0ac77545b7ad36dbd28c5388fb85e9156207c56d;hp=7164842106d7b61d36883b351167163aeb4e878a;hpb=fdc1f6eaf544f695fc1511f24bddd7e6069c33ba;p=mothur.git

diff --git a/pintail.h b/pintail.h
index 7164842..c970fdd 100644
--- a/pintail.h
+++ b/pintail.h
@@ -15,7 +15,7 @@
 #include "decalc.h"
 
 /***********************************************************/
-//This class was created using the algorythms described in the 
+//This class was created using the algorithms described in the 
 // "At Least 1 in 20 16S rRNA Sequence Records Currently Held in the Public Repositories is Estimated To Contain Substantial Anomalies" paper 
 //by Kevin E. Ashelford 1, Nadia A. Chuzhanova 3, John C. Fry 1, Antonia J. Jones 2 and Andrew J. Weightman 1.
 
@@ -28,13 +28,13 @@ class Pintail : public Chimera {
 		~Pintail();
 		
 		int getChimeras(Sequence*);
-		int print(ostream&, ostream&);
+		Sequence print(ostream&, ostream&);
 		
 		void setCons(string c)		{ consfile = c;  }
 		void setQuantiles(string q) { quanfile = q;  }
 		
 		#ifdef USE_MPI
-		int print(MPI_File&, MPI_File&);
+		Sequence print(MPI_File&, MPI_File&);
 		#endif
 		
 	private:
@@ -66,7 +66,7 @@ class Pintail : public Chimera {
 		float DE;			//DE is the deviaation for query
 		vector<float> probabilityProfile;
 		vector< vector<float> > quantiles;  //quantiles[0] is the vector of deviations with ceiling score of 1, quantiles[1] is the vector of deviations with ceiling score of 2...
-		vector< vector<quanMember> > quantilesMembers;  //quantiles[0] is the vector of deviations with ceiling score of 1, quantiles[1] is the vector of deviations with ceiling score of 2...
+		vector< vector<float> > quantilesMembers;  //quantiles[0] is the vector of deviations with ceiling score of 1, quantiles[1] is the vector of deviations with ceiling score of 2...
 		set<int>  h;
 		string mergedFilterString;