X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=pintail.cpp;h=b04efea9ba2c59b06dff4bf599d492dc2f9cd0e2;hb=002421a439168e2610a2b62f1318f21c7202fe6d;hp=c0ea90436628e8a86dbce69f894d8f3a353b7a27;hpb=1d7a10dc3dafd1606d6255bdb54e02429cbee47c;p=mothur.git

diff --git a/pintail.cpp b/pintail.cpp
index c0ea904..b04efea 100644
--- a/pintail.cpp
+++ b/pintail.cpp
@@ -249,8 +249,9 @@ int Pintail::doPrep() {
 	}
 }
 //***************************************************************************************************************
-int Pintail::print(ostream& out, ostream& outAcc) {
+Sequence* Pintail::print(ostream& out, ostream& outAcc) {
 	try {
+		
 		int index = ceil(deviation);
 		
 		//is your DE value higher than the 95%
@@ -279,7 +280,7 @@ int Pintail::print(ostream& out, ostream& outAcc) {
 		for (int m = 0; m < expectedDistance.size(); m++) {  out << expectedDistance[m] << '\t';  }
 		out << endl;
 		
-		return 0;
+		return NULL;
 		
 	}
 	catch(exception& e) {
@@ -289,9 +290,9 @@ int Pintail::print(ostream& out, ostream& outAcc) {
 }
 #ifdef USE_MPI
 //***************************************************************************************************************
-int Pintail::print(MPI_File& out, MPI_File& outAcc) {
+Sequence* Pintail::print(MPI_File& out, MPI_File& outAcc) {
 	try {
-		bool results = false;
+		
 		string outputString = "";
 		int index = ceil(deviation);
 		
@@ -319,7 +320,7 @@ int Pintail::print(MPI_File& out, MPI_File& outAcc) {
 			MPI_File_write_shared(outAcc, buf, length, MPI_CHAR, &statusAcc);
 			delete buf;
 
-			results = true;
+			return NULL;
 		}
 		outputString += "Observed\t";
 		
@@ -339,7 +340,7 @@ int Pintail::print(MPI_File& out, MPI_File& outAcc) {
 		MPI_File_write_shared(out, buf2, length, MPI_CHAR, &status);
 		delete buf2;
 		
-		return results;
+		return NULL;
 	}
 	catch(exception& e) {
 		m->errorOut(e, "Pintail", "print");
@@ -560,7 +561,11 @@ void Pintail::createProcessesQuan() {
 				out.close();
 				
 				exit(0);
-			}else { m->mothurOut("unable to spawn the necessary processes."); m->mothurOutEndLine(); exit(0); }
+			}else { 
+				m->mothurOut("[ERROR]: unable to spawn the necessary processes."); m->mothurOutEndLine(); 
+				for (int i = 0; i < processIDS.size(); i++) { kill (processIDS[i], SIGINT); }
+				exit(0);
+			}
 		}
 		
 		//parent does its part