X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=phylotypecommand.h;h=c5aea714714d2f95e5f57ced3fb8289f3039a481;hb=19b2ab858fcf2684213f741a0e7ac9c727f06362;hp=0322daf423ab716022e2146b6d4f352911fed693;hpb=7a2154809d332281cf4006943a9bd94b8208c837;p=mothur.git

diff --git a/phylotypecommand.h b/phylotypecommand.h
index 0322daf..c5aea71 100644
--- a/phylotypecommand.h
+++ b/phylotypecommand.h
@@ -26,13 +26,16 @@ public:
 	
 private:
 	bool abort, allLines;
-	string taxonomyFileName, label;
+	string taxonomyFileName, label, outputDir, namefile;
 	set<string> labels; //holds labels to be used
 	int cutoff;
+	map<string, string> namemap;
 	
 	map<int, int> currentNodes;
 	map<int, int> parentNodes;
 	map<int, int>::iterator itCurrent;
+	
+	int readNamesFile();
 
 };