X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=phylotypecommand.h;h=7fe10af58dde8ae842be2496376b3569df49bd29;hb=f12174bc43f9e8ad536f2a37fb3a763b1ac90ba9;hp=0e315ec7c4ef4fcdabc34b4037d7f8bba53cfea2;hpb=49d2b7459c5027557564b21e9487dadafbbbdc96;p=mothur.git diff --git a/phylotypecommand.h b/phylotypecommand.h index 0e315ec..7fe10af 100644 --- a/phylotypecommand.h +++ b/phylotypecommand.h @@ -26,8 +26,9 @@ public: vector setParameters(); string getCommandName() { return "phylotype"; } string getCommandCategory() { return "Clustering"; } - string getOutputFileNameTag(string, string); + string getHelpString(); + string getOutputPattern(string); string getCitation() { return "http://www.mothur.org/wiki/Phylotype"; } string getDescription() { return "cluster your sequences into OTUs based on their classifications"; }