X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=phylotypecommand.h;h=534dc8eefcc643bda6f71d23291462b01c4d3940;hb=7439a3c94e96c9e0e78ca53f0356415a879f8b80;hp=ecc7376ecb7ea1a312af1e374ae76fb089e08add;hpb=0caf3fbabaa3ece404f8ce77f4c883dc5b1bf1dc;p=mothur.git

diff --git a/phylotypecommand.h b/phylotypecommand.h
index ecc7376..534dc8e 100644
--- a/phylotypecommand.h
+++ b/phylotypecommand.h
@@ -26,7 +26,9 @@ public:
 	vector<string> setParameters();
 	string getCommandName()			{ return "phylotype";		}
 	string getCommandCategory()		{ return "Clustering";		}
+	
 	string getHelpString();	
+    string getOutputPattern(string);	
 	string getCitation() { return "http://www.mothur.org/wiki/Phylotype"; }
 	string getDescription()		{ return "cluster your sequences into OTUs based on their classifications"; }
 
@@ -40,7 +42,6 @@ private:
 	int cutoff;
 	map<string, string> namemap;
 	vector<string> outputNames;
-	map<string, vector<string> > outputTypes;
 	
 	map<int, int> currentNodes;
 	map<int, int> parentNodes;