X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=phylotypecommand.h;h=534dc8eefcc643bda6f71d23291462b01c4d3940;hb=67ea6ccd74dbd64828d31b952808255f206364ff;hp=0e315ec7c4ef4fcdabc34b4037d7f8bba53cfea2;hpb=49d2b7459c5027557564b21e9487dadafbbbdc96;p=mothur.git

diff --git a/phylotypecommand.h b/phylotypecommand.h
index 0e315ec..534dc8e 100644
--- a/phylotypecommand.h
+++ b/phylotypecommand.h
@@ -26,8 +26,9 @@ public:
 	vector<string> setParameters();
 	string getCommandName()			{ return "phylotype";		}
 	string getCommandCategory()		{ return "Clustering";		}
-	string getOutputFileNameTag(string, string);
+	
 	string getHelpString();	
+    string getOutputPattern(string);	
 	string getCitation() { return "http://www.mothur.org/wiki/Phylotype"; }
 	string getDescription()		{ return "cluster your sequences into OTUs based on their classifications"; }
 
@@ -41,7 +42,6 @@ private:
 	int cutoff;
 	map<string, string> namemap;
 	vector<string> outputNames;
-	map<string, vector<string> > outputTypes;
 	
 	map<int, int> currentNodes;
 	map<int, int> parentNodes;