X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=phylotypecommand.cpp;h=2d2db08a40ea5e1aa8712902dcd419ddb1ad757a;hb=2c97dd48b8e27ee0a6a86c7a082f4c504c3357c6;hp=f402f2a8ab15a1808a461d376818d97d98c5c5c7;hpb=a626c629e4d4840cd2ce04d98055dcfef1f8593a;p=mothur.git

diff --git a/phylotypecommand.cpp b/phylotypecommand.cpp
index f402f2a..2d2db08 100644
--- a/phylotypecommand.cpp
+++ b/phylotypecommand.cpp
@@ -232,6 +232,7 @@ int PhylotypeCommand::execute(){
 				
 				ListVector list;
 				list.setLabel(level);
+                
 				//go through nodes and build listvector 
 				for (itCurrent = currentNodes.begin(); itCurrent != currentNodes.end(); itCurrent++) {
 			
@@ -244,6 +245,7 @@ int PhylotypeCommand::execute(){
 					//make the names compatable with listvector
 					string name = "";
 					for (int i = 0; i < names.size(); i++) {  
+                        
                         if (names[i] != "unknown") {
                             if (namefile != "") {	
                                 map<string, string>::iterator itNames = namemap.find(names[i]);  //make sure this name is in namefile
@@ -255,9 +257,8 @@ int PhylotypeCommand::execute(){
                         }
 					}
 					name = name.substr(0, name.length()-1);  //rip off extra ','
-					
 					//add bin to list vector
-					list.push_back(name);
+					if (name != "") { list.push_back(name); } //caused by unknown
 				}	
 				
 				//print listvector