X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=phylotree.h;h=a961721a77dad0f32624aa1ff7941651007fc757;hb=62568a297aaf939ab753334f17abde82ec8e8531;hp=2f3745074e170210bfc0b8d6b000361b4a410687;hpb=b8f3e71c8a0310e25261464d27e6fcfe891483b0;p=mothur.git

diff --git a/phylotree.h b/phylotree.h
index 2f37450..a961721 100644
--- a/phylotree.h
+++ b/phylotree.h
@@ -41,13 +41,15 @@ public:
 	vector<int> getGenusTotals();	
 	void setUp(string);  //used to create file needed for summary file if you use () constructor and add seqs manually instead of passing taxonomyfile
 		
-	TaxNode get(int i)				{	return tree[i];							}
-	TaxNode get(string seqName)		{	return tree[name2Taxonomy[seqName]];	}
-	int getIndex(string seqName)	{	return name2Taxonomy[seqName];			}
-	string getName(int i)			{	return tree[i].name;					}
+	TaxNode get(int i);				
+	TaxNode get(string seqName);
+	string getName(int i);			
+	int getIndex(string seqName);	
+			
 	string getFullTaxonomy(string);	 //pass a sequence name return taxonomy
 	int getMaxLevel()				{	return maxLevel;						}
 	int getNumSeqs()  {  return numSeqs;  }
+	bool ErrorCheck(vector<string>);
 	
 private:
 	string getNextTaxon(string&);