X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=phylotree.h;h=2f3745074e170210bfc0b8d6b000361b4a410687;hb=62cdb3eb996664abdb8fee21bf4a329cd0694867;hp=a57cf256ecf0e0eded1182681f7ab91601e0a1a5;hpb=19b2ab858fcf2684213f741a0e7ac9c727f06362;p=mothur.git

diff --git a/phylotree.h b/phylotree.h
index a57cf25..2f37450 100644
--- a/phylotree.h
+++ b/phylotree.h
@@ -51,7 +51,8 @@ public:
 	
 private:
 	string getNextTaxon(string&);
-	void print(ofstream&, vector<TaxNode>&);
+	void print(ofstream&, vector<TaxNode>&); //used to create static reference taxonomy file
+	void fillOutTree(int, vector<TaxNode>&); //used to create static reference taxonomy file
 	void binUnclassified(string);
 	
 	vector<TaxNode> tree;
@@ -59,6 +60,7 @@ private:
 	vector<int> totals; //holds the numSeqs at each genus level taxonomy
 	map<string, int> name2Taxonomy;  //maps name to index in tree
 	map<int, int> uniqueTaxonomies;  //map of unique taxonomies
+	map<int, int> leafNodes; //used to create static reference taxonomy file
 	//void print(int, ofstream&);
 	int numNodes;
 	int numSeqs;