X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=phylotree.cpp;h=a07cfde3b20aefe619b6c4638383c31655f82745;hb=2397df97b12cd5d21ea10dc4248c18a5803ddd41;hp=8d03607820955f6f4474a78f0505fad9de93ad81;hpb=d5bf2c1354d0811a33394d918b15620606560d58;p=mothur.git

diff --git a/phylotree.cpp b/phylotree.cpp
index 8d03607..a07cfde 100644
--- a/phylotree.cpp
+++ b/phylotree.cpp
@@ -17,6 +17,7 @@ PhyloTree::PhyloTree(){
 		numSeqs = 0;
 		tree.push_back(TaxNode("Root"));
 		tree[0].heirarchyID = "0";
+		maxLevel = 0;
 	}
 	catch(exception& e) {
 		errorOut(e, "PhyloTree", "PhyloTree");
@@ -219,6 +220,25 @@ void PhyloTree::binUnclassified(){
 	}
 }
 /**************************************************************************************************/
+string PhyloTree::getFullTaxonomy(string seqName) {
+	try {
+		string tax = "";
+		
+		int currentNode = name2Taxonomy[seqName];
+		
+		while (tree[currentNode].parent != -1) {
+			tax = tree[currentNode].name + ";" + tax;
+			currentNode = tree[currentNode].parent;
+		}
+		
+		return tax;
+	}
+	catch(exception& e) {
+		errorOut(e, "PhyloTree", "getFullTaxonomy");
+		exit(1);
+	}
+}
+/**************************************************************************************************/
 
 void PhyloTree::print(ofstream& out){
 	try {