X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=phylotree.cpp;fp=phylotree.cpp;h=a9ef6cb0d85f44bde915606eb452db993ec40d8d;hb=53171f07cc0c0e560e2b4ba2946f690d59fc2dc4;hp=dba1e3b56951f8ae1c484ace22187a9b65053d35;hpb=8da8321bc4d705f6c156248d6229c60a0204f750;p=mothur.git

diff --git a/phylotree.cpp b/phylotree.cpp
index dba1e3b..a9ef6cb 100644
--- a/phylotree.cpp
+++ b/phylotree.cpp
@@ -128,8 +128,6 @@ PhyloTree::PhyloTree(string tfile){
 		maxLevel = 0;
 		calcTotals = true;
 		string name, tax;
-		addSeqToTree("unknown", "unknown;");
-
 		
 		#ifdef USE_MPI
 			int pid, num, processors;
@@ -193,7 +191,16 @@ PhyloTree::PhyloTree(string tfile){
 		#endif
 	
 		assignHeirarchyIDs(0);
-	
+        
+        
+        string unknownTax = "unknown;";
+        //added last taxon until you get desired level
+		for (int i = 1; i < maxLevel; i++) {
+			unknownTax += "unclassfied;";
+		}
+        
+        addSeqToTree("unknown", unknownTax);
+        
 		//create file for summary if needed
 		setUp(tfile);
 	}