X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=phylosummary.h;h=cdec0d0a4ac7ca83cb0845988adb90152bcae07b;hb=6ede3bf5c0a9eedb23f24577a97da81ab3e1f7df;hp=9ebdf81ac4fbd06490f05d7be7c15b6f6a5d1179;hpb=cd9dbd8b53bbe32af3e9c6bead4aa6d796a278a5;p=mothur.git

diff --git a/phylosummary.h b/phylosummary.h
index 9ebdf81..cdec0d0 100644
--- a/phylosummary.h
+++ b/phylosummary.h
@@ -32,11 +32,13 @@ struct rawTaxNode {
 class PhyloSummary {
 
 public:
+	PhyloSummary(string);
 	PhyloSummary(string, string);
 	~PhyloSummary() { if (groupmap != NULL)  {  delete groupmap;  }  }
 	
-	void summarize(string);  //pass it a taxonomy file and a group file and it makes the tree
+	int summarize(string);  //pass it a taxonomy file and a group file and it makes the tree
 	int addSeqToTree(string, string);
+	int addSeqToTree(string, vector<string>);
 	void print(ofstream&);
 	int getMaxLevel() { return maxLevel; }
 	
@@ -47,6 +49,7 @@ private:
 	void assignRank(int);
 	void readTreeStruct(ifstream&);
 	GroupMap* groupmap;
+	bool ignore;
 	
 	int numNodes;
 	int numSeqs;