X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=phylosummary.h;fp=phylosummary.h;h=3adcc3f5fb0ed1f31bf0f2c223dff553f487a61a;hb=763d07b1c215b1bdc9d5d63431f78cfecc60acf5;hp=04ba65f8ad6c93a5db879a323a2a6b6ed890a3c5;hpb=8c8acb6218f58f662466e4111ab8aa4da0caf93c;p=mothur.git

diff --git a/phylosummary.h b/phylosummary.h
index 04ba65f..3adcc3f 100644
--- a/phylosummary.h
+++ b/phylosummary.h
@@ -36,7 +36,7 @@ public:
 	PhyloSummary(string, string);
 	~PhyloSummary() { if (groupmap != NULL)  {  delete groupmap;  }  }
 	
-	void summarize(string);  //pass it a taxonomy file and a group file and it makes the tree
+	int summarize(string);  //pass it a taxonomy file and a group file and it makes the tree
 	int addSeqToTree(string, string);
 	int addSeqToTree(string, vector<string>);
 	void print(ofstream&);
@@ -55,6 +55,8 @@ private:
 	int numSeqs;
 	int maxLevel;
 	MothurOut* m;
+	
+	void removeConfidences(string&);
 };
 
 /**************************************************************************************************/