X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=phylosummary.cpp;h=5612d7bbf3eded6f86bcdce40c45048ee8edcb25;hb=5c80ce8b80938d41cf6c64a017fa6fd50d45de5b;hp=915a05ff74a14e7fac2a32da119c184ee9908293;hpb=62cdb3eb996664abdb8fee21bf4a329cd0694867;p=mothur.git

diff --git a/phylosummary.cpp b/phylosummary.cpp
index 915a05f..5612d7b 100644
--- a/phylosummary.cpp
+++ b/phylosummary.cpp
@@ -114,6 +114,8 @@ int PhyloSummary::addSeqToTree(string seqName, string seqTaxonomy){
 					//find out the sequences group
 					string group = groupmap->getGroup(seqName);
 					
+					if (group == "not found") {  m->mothurOut(seqName + " is not in your groupfile, and will be included in the overall total, but not any group total."); m->mothurOutEndLine();  }
+					
 					//do you have a count for this group?
 					map<string, int>::iterator itGroup = tree[currentNode].groupCount.find(group);