X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=phylosummary.cpp;h=2f565150aabeec35cc8a3c03a459d8b85090550b;hb=f67ace597e7147f3ca35201e3623abe6440a9d24;hp=22e8e75ce7047e00b135483f16b566eb506a71fb;hpb=74dc92cf53df65fd8b14d8eaf35489bbecbccac6;p=mothur.git

diff --git a/phylosummary.cpp b/phylosummary.cpp
index 22e8e75..2f56515 100644
--- a/phylosummary.cpp
+++ b/phylosummary.cpp
@@ -25,7 +25,7 @@ PhyloSummary::PhyloSummary(string refTfile, string groupFile){
 		}
 				
 		//check for necessary files
-		string taxFileNameTest = refTfile.substr(0,refTfile.find_last_of(".")+1) + "tree.sum";
+		string taxFileNameTest = m->getFullPathName((refTfile.substr(0,refTfile.find_last_of(".")+1) + "tree.sum"));
 		ifstream FileTest(taxFileNameTest.c_str());
 		
 		if (!FileTest) { 
@@ -121,6 +121,7 @@ string PhyloSummary::getNextTaxon(string& heirarchy){
 
 int PhyloSummary::addSeqToTree(string seqName, string seqTaxonomy){
 	try {
+				
 		numSeqs++;
 		
 		map<string, int>::iterator childPointer;