X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=phylosummary.cpp;fp=phylosummary.cpp;h=22e8e75ce7047e00b135483f16b566eb506a71fb;hb=74dc92cf53df65fd8b14d8eaf35489bbecbccac6;hp=b645bac794777a1050de116407fa834370e7940e;hpb=4c5e7a20a03ddc6feb49ff9d21fcb4c79bc5508d;p=mothur.git

diff --git a/phylosummary.cpp b/phylosummary.cpp
index b645bac..22e8e75 100644
--- a/phylosummary.cpp
+++ b/phylosummary.cpp
@@ -131,7 +131,7 @@ int PhyloSummary::addSeqToTree(string seqName, string seqTaxonomy){
 		int level = 0;
 		
 		//are there confidence scores, if so remove them
-		if (seqTaxonomy.find_first_of('(') != -1) {  removeConfidences(seqTaxonomy);	}
+		if (seqTaxonomy.find_first_of('(') != -1) {  m->removeConfidences(seqTaxonomy);	}
 		
 		while (seqTaxonomy != "") {
 			
@@ -229,7 +229,7 @@ int PhyloSummary::addSeqToTree(string seqTaxonomy, vector<string> names){
 		int level = 0;
 		
 		//are there confidence scores, if so remove them
-		if (seqTaxonomy.find_first_of('(') != -1) {  removeConfidences(seqTaxonomy);	}
+		if (seqTaxonomy.find_first_of('(') != -1) {  m->removeConfidences(seqTaxonomy);	}
 		
 		while (seqTaxonomy != "") {
 			
@@ -496,35 +496,6 @@ void PhyloSummary::readTreeStruct(ifstream& in){
 	}
 }
 /**************************************************************************************************/
-void PhyloSummary::removeConfidences(string& tax) {
-	try {
-		
-		string taxon;
-		string newTax = "";
-		
-		while (tax.find_first_of(';') != -1) {
-			//get taxon
-			taxon = tax.substr(0,tax.find_first_of(';'));
-			
-			int pos = taxon.find_first_of('(');
-			if (pos != -1) {
-				taxon = taxon.substr(0, pos); //rip off confidence 
-			}
-			
-			taxon += ";";
-			
-			tax = tax.substr(tax.find_first_of(';')+1, tax.length());
-			newTax += taxon;
-		}
-		
-		tax = newTax;
-	}
-	catch(exception& e) {
-		m->errorOut(e, "PhyloSummary", "removeConfidences");
-		exit(1);
-	}
-}
-/**************************************************************************************************/