X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=phylodiversitycommand.h;fp=phylodiversitycommand.h;h=f6c3bbe1d06495717310a464d423c884fb1ac717;hb=8bc3e5b38c2317a1715f53be22fa96455868c281;hp=7d4b2d89484a88e4bc5016f19e2e24c89ab07a4e;hpb=f663afa231c9bc1b5e18e0ea3bdd2b2ee784f5b2;p=mothur.git

diff --git a/phylodiversitycommand.h b/phylodiversitycommand.h
index 7d4b2d8..f6c3bbe 100644
--- a/phylodiversitycommand.h
+++ b/phylodiversitycommand.h
@@ -18,7 +18,12 @@ class PhyloDiversityCommand : public Command {
 	
 	public:
 		PhyloDiversityCommand(string);
+		PhyloDiversityCommand();
 		~PhyloDiversityCommand();
+		vector<string> getRequiredParameters();
+		vector<string> getValidParameters();
+		vector<string> getRequiredFiles();
+		map<string, vector<string> > getOutputFiles() { return outputTypes; }
 		int execute();	
 		void help();
 	
@@ -30,6 +35,7 @@ class PhyloDiversityCommand : public Command {
 		bool abort, rarefy, summary, collect, scale;
 		string groups, outputDir;
 		vector<string> Groups, outputNames; //holds groups to be used, and outputFile names
+		map<string, vector<string> > outputTypes;
 		
 		void printData(set<int>&, map< string, vector<float> >&, ofstream&, int);
 		void printSumData(map< string, vector<float> >&, ofstream&, int);