X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=phylodiversitycommand.h;fp=phylodiversitycommand.h;h=7d4b2d89484a88e4bc5016f19e2e24c89ab07a4e;hb=f663afa231c9bc1b5e18e0ea3bdd2b2ee784f5b2;hp=a7e0d2e5d090f3e567446fe4e76d9ee3dd7d776b;hpb=a537fefa3bd2c2eba7d532249375b6a11b295e25;p=mothur.git

diff --git a/phylodiversitycommand.h b/phylodiversitycommand.h
index a7e0d2e..7d4b2d8 100644
--- a/phylodiversitycommand.h
+++ b/phylodiversitycommand.h
@@ -26,7 +26,7 @@ class PhyloDiversityCommand : public Command {
 		GlobalData* globaldata;
 		
 		float freq;
-		int iters;  
+		int iters, processors;  
 		bool abort, rarefy, summary, collect, scale;
 		string groups, outputDir;
 		vector<string> Groups, outputNames; //holds groups to be used, and outputFile names
@@ -34,6 +34,9 @@ class PhyloDiversityCommand : public Command {
 		void printData(set<int>&, map< string, vector<float> >&, ofstream&, int);
 		void printSumData(map< string, vector<float> >&, ofstream&, int);
 		float calcBranchLength(Tree*, int, map< string, set<int> >&);
+		int driver(Tree*, map< string, vector<float> >&, map<string, vector<float> >&, int, int, vector<int>&, set<int>&, ofstream&, ofstream&, bool);
+		int createProcesses(vector<int>&, Tree*, map< string, vector<float> >&, map<string, vector<float> >&, int, int, vector<int>&, set<int>&, ofstream&, ofstream&);
+
 };
 
 #endif