X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=phylodiversitycommand.h;fp=phylodiversitycommand.h;h=76c996c405a92fdb7f5c51d67728c46cf9c902b0;hb=1d18c13c5d71e92ee850a0d8d7cda4f0ef530bf7;hp=0aafb8dbc53305a327f7a2b825a2b9c74df8bdb9;hpb=2df35fdeea85f574630d75b11fb5b08c39aec31a;p=mothur.git

diff --git a/phylodiversitycommand.h b/phylodiversitycommand.h
index 0aafb8d..76c996c 100644
--- a/phylodiversitycommand.h
+++ b/phylodiversitycommand.h
@@ -27,11 +27,12 @@ class PhyloDiversityCommand : public Command {
 		
 		float freq;
 		int iters;  
-		bool abort, rarefy;
+		bool abort, rarefy, summary, collect, scale;
 		string groups, outputDir;
 		vector<string> Groups, outputNames; //holds groups to be used, and outputFile names
 		
-		void printData(set<int>&, map< string, vector<float> >&, string);
+		void printData(set<int>&, map< string, vector<float> >&, ofstream&, int);
+		void printSumData(map< string, vector<float> >&, ofstream&, int);
 		float calcBranchLength(Tree*, int);
 };