X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=phylodiversitycommand.cpp;h=0c2f72d0ad6fd57f628ec01d16ba6c8c31a00d8c;hb=29b2a01f3daf8f16438b16f0e44b1c36d989d60b;hp=19c65ce9a11c30e19d6d10a477165c1bcbe164c1;hpb=4a2d841cb97fb02351022efe9d7068b1dc212bf9;p=mothur.git

diff --git a/phylodiversitycommand.cpp b/phylodiversitycommand.cpp
index 19c65ce..0c2f72d 100644
--- a/phylodiversitycommand.cpp
+++ b/phylodiversitycommand.cpp
@@ -113,7 +113,7 @@ int PhyloDiversityCommand::execute(){
 		
 			if (m->control_pressed) { for (int i = 0; i < outputNames.size(); i++) {	remove(outputNames[i].c_str()); 	} return 0; }
 			
-			phylo.setTotalGroupBranchLengths(trees[i]);
+			//phylo.setTotalGroupBranchLengths(trees[i]);
 			
 			string outFile = outputDir + getRootName(getSimpleName(globaldata->getTreeFile()))  + toString(i+1) + ".phylo.diversity";
 			if (rarefy) { outFile += ".rarefaction"; }