X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=pcrseqscommand.h;h=baeca4eedc66ac9aa38acaa4b7d65bfebca56410;hb=28bcfc4a41b8b82f66636587e0d4d355d07cbdd1;hp=45ce6f3f153e6020f00c859b1928cc1d74ea2a55;hpb=82723a54e6109e2d46d84c10e87727cebd5a18ea;p=mothur.git

diff --git a/pcrseqscommand.h b/pcrseqscommand.h
index 45ce6f3..baeca4e 100644
--- a/pcrseqscommand.h
+++ b/pcrseqscommand.h
@@ -25,6 +25,7 @@ public:
 	vector<string> setParameters();
 	string getCommandName()			{ return "pcr.seqs";	}
 	string getCommandCategory()		{ return "Sequence Processing";		}
+	string getOutputFileNameTag(string, string);
 	string getHelpString();	
 	string getCitation() { return "http://www.mothur.org/wiki/Pcr.seqs"; }
 	string getDescription()		{ return "pcr.seqs"; }
@@ -45,7 +46,7 @@ private:
 	bool getOligos(vector<vector<string> >&, vector<vector<string> >&, vector<vector<string> >&);
     bool abort, keepprimer, keepdots;
 	string fastafile, oligosfile, taxfile, groupfile, namefile, ecolifile, outputDir, nomatch;
-	int start, end, pdiffs, processors, length;
+	int start, end, processors, length;
 	
     vector<string> revPrimer, outputNames;
 	vector<string> primers;