X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=pcoacommand.h;h=93feefa3dec06bc6084055fc701a6cd8baf058de;hb=79a7d3273749b08d4f9f8dfe350c964ff0c4351e;hp=d9aa270320999d4e5f35e68b1525746ec78e3ae4;hpb=e150b0b0664caec517485ee6d69dcdade6dcae77;p=mothur.git diff --git a/pcoacommand.h b/pcoacommand.h index d9aa270..93feefa 100644 --- a/pcoacommand.h +++ b/pcoacommand.h @@ -25,9 +25,11 @@ public: vector setParameters(); string getCommandName() { return "pcoa"; } string getCommandCategory() { return "Hypothesis Testing"; } + string getOutputFileNameTag(string, string); string getHelpString(); - string getCitation() { return "http://www.mothur.org/wiki/Pcoa"; } - + string getCitation() { return "McCune B, Grace JB, Urban DL (2002). Analysis of ecological communities. MjM Software Design: Gleneden Beach, OR. \nLegendre P, Legendre L (1998). Numerical Ecology. Elsevier: New York. \nhttp://www.mothur.org/wiki/Pcoa"; } + string getDescription() { return "pcoa"; } + int execute(); void help() { m->mothurOut(getHelpString()); }