X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=pcoacommand.h;h=29957f1140e81517cc5a244a696eba7aaf1db49a;hb=bd27c2b0612942815b7417c79f7ee41f669a2a34;hp=ea4d2b381e8c5b60a3d7006e51d128dda72081bb;hpb=ca9ac1d80c62f57270b0dcd49410ebe08a8aecd6;p=mothur.git

diff --git a/pcoacommand.h b/pcoacommand.h
index ea4d2b3..29957f1 100644
--- a/pcoacommand.h
+++ b/pcoacommand.h
@@ -25,8 +25,12 @@ public:
 	vector<string> setParameters();
 	string getCommandName()			{ return "pcoa";					}
 	string getCommandCategory()		{ return "Hypothesis Testing";		}
-	string getHelpString();	
 	
+	string getHelpString();	
+    string getOutputPattern(string);	
+	string getCitation() { return "McCune B, Grace JB, Urban DL (2002). Analysis of ecological communities. MjM Software Design: Gleneden Beach, OR. \nLegendre P, Legendre L (1998). Numerical Ecology. Elsevier: New York. \nhttp://www.mothur.org/wiki/Pcoa"; }
+	string getDescription()		{ return "pcoa"; }
+
 	int execute();
 	void help() { m->mothurOut(getHelpString()); }